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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "COMMOTR" in publications use:'
type: software
license: MIT
title: 'COMMOTR: Screening Cell-Cell Communication in Spatial Transcriptomics via
  Collective Optimal Transport'
version: 1.0.0
doi: 10.32614/CRAN.package.COMMOTR
abstract: Infers cell-cell communication in spatial transcriptomics data using collective
  optimal transport. The method models ligand-receptor interactions as optimal transport
  problems with spatial distance constraints, providing communication direction inference,
  cluster-level analysis, and comprehensive visualization. This is an R implementation
  based on the COMMOT algorithm (Cang et al., Nature Methods, 2023).
authors:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0000-0000
repository: https://zaoqu-liu.r-universe.dev
repository-code: https://github.com/Zaoqu-Liu/COMMOTR
commit: d201e5449329a215401be3f9d9b64410bfe5e669
url: https://zaoqu-liu.github.io/COMMOTR/
date-released: '2026-01-25'
contact:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0000-0000