Package: CellODE
Type: Package
Title: Cellular Dynamics Inference Using Neural ODE
Version: 1.0.0
Authors@R: person("Zaoqu", "Liu", 
                  email = "liuzaoqu@163.com", 
                  role = c("aut", "cre"),
                  comment = c(ORCID = "0000-0002-0000-0000"))
Description: An R implementation for single-cell trajectory inference
        using Variational Autoencoder (VAE) and Neural Ordinary
        Differential Equations (Neural ODE). CellODE automatically
        infers cellular dynamics from single-cell RNA sequencing data,
        providing pseudotime estimation, latent space representation,
        and vector field analysis. The package is designed for seamless
        integration with Seurat objects and supports both Seurat V4 and
        V5.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.0.0)
Imports: torch (>= 0.9.0), R6, Matrix, Rcpp, RcppArmadillo, ggplot2,
        coro, methods
Suggests: Seurat (>= 4.0.0), testthat (>= 3.0.0), knitr, rmarkdown,
        pkgdown
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
URL: https://zaoqu-liu.github.io/CellODE/,
        https://github.com/Zaoqu-Liu/CellODE
BugReports: https://github.com/Zaoqu-Liu/CellODE/issues
Config/testthat/edition: 3
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-25 18:08:27 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/CellODE
RemoteRef: main
RemoteSha: d163c8cf8510a34abb4af5e2b783163b9387ad3d
NeedsCompilation: yes
Packaged: 2026-09-20 11:31:36 UTC; root
Author: Zaoqu Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0000-0000>)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>