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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CellODE" in publications use:'
type: software
license: MIT
title: 'CellODE: Cellular Dynamics Inference Using Neural ODE'
version: 1.0.0
doi: 10.32614/CRAN.package.CellODE
abstract: An R implementation for single-cell trajectory inference using Variational
  Autoencoder (VAE) and Neural Ordinary Differential Equations (Neural ODE). CellODE
  automatically infers cellular dynamics from single-cell RNA sequencing data, providing
  pseudotime estimation, latent space representation, and vector field analysis. The
  package is designed for seamless integration with Seurat objects and supports both
  Seurat V4 and V5.
authors:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0000-0000
repository: https://zaoqu-liu.r-universe.dev
repository-code: https://github.com/Zaoqu-Liu/CellODE
commit: d163c8cf8510a34abb4af5e2b783163b9387ad3d
url: https://zaoqu-liu.github.io/CellODE/
date-released: '2026-01-25'
contact:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0000-0000