Package: Connectome
Version: 1.0.2
Date: 2026-01-23
Title: Single Cell Connectomics
Authors@R: c(
    person("Zaoqu", "Liu", email = "liuzaoqu@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X")),
    person("Micha Sam", "Brickman Raredon", email = "michasam.raredon@yale.edu", 
           role = c("aut"), comment = "Original author"))
Description: A toolkit for exploring cell-cell connectivity patterns
        based on ligand and receptor expression in heterogeneous
        single-cell datasets. Implements methods for constructing,
        filtering, and visualizing connectomic networks from
        single-cell RNA sequencing data. Supports multiple species via
        the FANTOM5 ligand-receptor database. Methods described in
        Raredon et al (2022) <doi:10.1038/s41598-022-07959-x>.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.3
VignetteBuilder: knitr
URL: https://zaoqu-liu.github.io/Connectome,
        https://github.com/Zaoqu-Liu/Connectome
BugReports: https://github.com/Zaoqu-Liu/Connectome/issues
Depends: R (>= 3.5.0)
Imports: dplyr, ggrepel, igraph, scales, Seurat (>= 4.0.0), data.table,
        ggplot2, cowplot, Matrix, gtools, circlize, ComplexHeatmap,
        grid
Suggests: knitr, rmarkdown, future, future.apply, parallel, ggthemes
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl python3 zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-23 12:40:15 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/Connectome
RemoteRef: main
RemoteSha: 956f1e43d8946563404cb28de2c5137f6ea86ff5
NeedsCompilation: no
Packaged: 2026-06-22 10:04:11 UTC; root
Author: Zaoqu Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0452-742X>),
  Micha Sam Brickman Raredon [aut] (Original author)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>