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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CytoSPACER" in publications use:'
type: software
license: MIT
title: 'CytoSPACER: Mapping Single-Cell Transcriptomes to Spatial Transcriptomics
  Data'
version: 1.0.0
doi: 10.32614/CRAN.package.CytoSPACER
abstract: CytoSPACER is an R implementation of CytoSPACE, a computational strategy
  for assigning single-cell transcriptomes to in situ spatial transcriptomics (ST)
  data. The method solves single cell/spot assignment by minimizing a correlation-based
  cost function through a linear programming-based optimization routine using the
  Jonker-Volgenant algorithm. This package provides high-performance implementations
  using Rcpp and supports parallel processing across all platforms.
authors:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-5623-6869
repository: https://zaoqu-liu.r-universe.dev
repository-code: https://github.com/Zaoqu-Liu/CytoSPACER
commit: 885560a47a2170304bac1c921277a4633ee7a2e0
url: https://zaoqu-liu.github.io/CytoSPACER/
date-released: '2026-01-25'
contact:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-5623-6869