Package: MOFSR
Type: Package
Title: Multi-Omics Fusion for Subtype Recognition
Version: 2.3.0
Author: Zaoqu Liu [aut, cre] (<https://orcid.org/0000-0002-0452-742X>)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>
Authors@R: c(
    person("Zaoqu", "Liu", 
           email = "liuzaoqu@163.com", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X"))
    )
Description: A comprehensive toolkit for integrating multi-modal
        biological data to discover disease subtypes and biological
        mechanisms. MOFSR provides 15 state-of-the-art multi-omics
        clustering algorithms (SNF, wSNF, CPCA, iClusterBayes, IntNMF,
        LRAcluster, MCIA, MOFA, NEMO, PINSPlus, RGCCA, SGCCA, CIMLR,
        BCC, LateFusion), 17 classification methods, parallel computing
        support, comprehensive visualization (UMAP, heatmaps, survival
        curves), data preprocessing (normalization, filtering, batch
        correction, QC), feature selection with bootstrap validation,
        and cluster quality assessment. All core algorithms are
        implemented internally for maximum compatibility,
        cross-platform support, and optimized performance. Works on
        Windows, macOS, and Linux without external dependencies for
        core functionality.
License: GPL (>= 3)
URL: https://zaoqu-liu.github.io/MOFSR/,
        https://github.com/Zaoqu-Liu/MOFSR
BugReports: https://github.com/Zaoqu-Liu/MOFSR/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0)
Imports: stats, graphics
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, bench, ggplot2,
        glmnet, nnet, e1071, randomForest, xgboost, survival,
        survminer, dplyr, tibble, GSVA, BiocManager, BiocGenerics,
        BiocParallel, Hmisc, MASS, adabag, caret, furrr, future,
        future.apply, gbm, mlr3, mlr3learners, progress, purrr, rpart,
        stringr, class, parallel
RoxygenNote: 7.3.3
Config/testthat/edition: 3
VignetteBuilder: knitr
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-29 07:35:37 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/MOFSR
RemoteRef: master
RemoteSha: ebcefdc51eb166ecacbe12441132af1af78d3457
NeedsCompilation: no
Packaged: 2026-07-06 07:23:32 UTC; root