Package: MultiK
Type: Package
Title: Multi-Resolution Consensus Clustering for Single-Cell RNA-seq
Version: 1.0.0
Authors@R: c(
    person("Zaoqu", "Liu", email = "liuzaoqu@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X")),
    person("Siyao", "Liu", email = "siyao@email.unc.edu", role = "aut"))
Description: Identifies optimal cluster numbers in single-cell RNA-seq
        data through subsampling-based consensus clustering. MultiK
        performs repeated subsampling and clustering across multiple
        resolution parameters, then evaluates clustering stability
        using the Proportion of Ambiguous Clustering (PAC) metric.
        Statistical significance of cluster separability is assessed
        using SigClust.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.3
URL: https://github.com/Zaoqu-Liu/MultiK,
        https://zaoqu-liu.github.io/MultiK
BugReports: https://github.com/Zaoqu-Liu/MultiK/issues
Depends: R (>= 4.0.0)
Imports: Seurat (>= 4.0.0), sigclust, ggplot2, cowplot, ggrepel,
        gridExtra, scales, stats, utils, methods, future, future.apply,
        parallel
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-23 15:10:15 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/MultiK
RemoteRef: main
RemoteSha: 780a0075c89a81017655fd980eb72edd6a4cd934
NeedsCompilation: no
Packaged: 2026-06-23 10:43:00 UTC; root
Author: Zaoqu Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0452-742X>),
  Siyao Liu [aut]
Maintainer: Zaoqu Liu <liuzaoqu@163.com>