Package: SCEVAN
Type: Package
Title: Single CEll Variational Aneuploidy aNalysis
Version: 1.0.6
Date: 2026-01-24
Author: Zaoqu Liu [ctb, cre], A. De Falco [aut], M. Ceccarelli [aut]
Maintainer: Zaoqu Liu <liuzaoqu@163.com>
Description: SCEVAN automatically classifies cells in scRNA-seq data by
        segregating non-malignant cells of tumor microenvironment from
        malignant cells. It also infers copy number profiles of
        malignant cells, identifies subclonal structures and analyzes
        specific and shared alterations of each subpopulation.
License: GPL-2
URL: https://zaoqu-liu.github.io/SCEVAN/,
        https://github.com/Zaoqu-Liu/SCEVAN
BugReports: https://github.com/Zaoqu-Liu/SCEVAN/issues
biocViews:
Imports: parallelDist, pheatmap, forcats, parallel, dplyr, magrittr,
        methods, fgsea, ggplot2, Rtsne, scran, igraph, ape, ggtree,
        ggrepel, RColorBrewer, grid, stats, utils, grDevices, graphics
LazyLoad: yes
NeedsCompilation: yes
RoxygenNote: 7.3.3
Depends: R (>= 3.5.0)
Suggests: rmarkdown, knitr, Seurat, clue, Biobase, biomaRt
VignetteBuilder: knitr
Encoding: UTF-8
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-24 06:31:33 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/SCEVAN
RemoteRef: main
RemoteSha: 07b7f0383bcfea19fe4bd2aee4488aa4b072da67
Packaged: 2026-07-03 13:02:26 UTC; root