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message: 'To cite package "STRIDER" in publications use:'
type: software
license: MIT
title: 'STRIDER: Spatial Transcriptomics Deconvolution and Integration in R'
version: 1.0.0
doi: 10.32614/CRAN.package.STRIDER
abstract: STRIDER (Spatial Transcriptomics deconvolutIon and integration in R) provides
  comprehensive tools for analyzing spatial transcriptomics data. The package implements
  topic modeling based deconvolution using Latent Dirichlet Allocation (LDA) to decompose
  spatial spots into cell type proportions. It also provides multi-sample integration
  using Fused Gromov-Wasserstein (FGW) optimal transport, spatial clustering with
  neighborhood awareness, and visualization functions. STRIDER is designed to work
  seamlessly with Seurat objects (v4 and v5) and supports various input formats including
  10X Genomics HDF5 files.
authors:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-4386-2787
repository: https://zaoqu-liu.r-universe.dev
repository-code: https://github.com/Zaoqu-Liu/STRIDER
commit: 8fbfecb48f36d48d6536524fcc066393fb2052f4
url: https://github.com/Zaoqu-Liu/STRIDER
date-released: '2026-01-25'
contact:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-4386-2787