Package: SecAct
Version: 1.0.1
Title: Secreted Signaling Activity Inference
Description: Inferring secreted protein activities at bulk,
        single-cell, and spatial levels. SecAct uses ridge regression
        with permutation-based significance testing to infer the
        activity of over 1000 secreted proteins from gene expression
        profiles.
Authors@R: c(
    person(given = "Beibei", family = "Ru", role = c("aut"), email = "beibei.ru@nih.gov"),
    person(given = "Zaoqu", family = "Liu", role = c("cre", "ctb"), email = "liuzaoqu@163.com"))
License: GPL-3 + file LICENSE
URL: https://zaoqu-liu.github.io/SecAct/,
        https://github.com/Zaoqu-Liu/SecAct
BugReports: https://github.com/Zaoqu-Liu/SecAct/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.1.0)
SystemRequirements: GNU Scientific Library (GSL) - optional on Windows
Imports: Matrix, ggplot2, reshape2, NMF, gganimate, metap, circlize,
        ggalluvial, survival, survminer, parallel, ComplexHeatmap,
        RANN, akima, scales, grid
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, RColorBrewer,
        patchwork
VignetteBuilder: knitr
biocViews: ComplexHeatmap
Config/pak/sysreqs: libabsl-dev cmake libfftw3-dev libgdal-dev gdal-bin
        libgeos-dev make libgsl0-dev libicu-dev libjpeg-dev libpng-dev
        libxml2-dev libssl-dev perl libproj-dev libsqlite3-dev
        libudunits2-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-23 14:43:41 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/SecAct
RemoteRef: main
RemoteSha: d65240f8675448cd9f2a1ccfd02b323684279c0a
NeedsCompilation: yes
Packaged: 2026-06-22 10:03:03 UTC; root
Author: Beibei Ru [aut],
  Zaoqu Liu [cre, ctb]
Maintainer: Zaoqu Liu <liuzaoqu@163.com>