Package: SpaTalk
Title: Spatially Resolved Cell-Cell Communication Inference for Spatial
        Transcriptomics
Version: 2.0.0
Depends: R (>= 4.0.0), ggalluvial, doParallel
Authors@R: c(
    person("Zaoqu", "Liu", , "liuzaoqu@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X")),
    person("Xin", "Shao", , "xin_shao@zju.edu.cn", role = c("aut"),
           comment = c(ORCID = "0000-0002-1928-3878")))
Description: Infers spatially resolved cell-cell communications from
        spatial transcriptomics data using graph network and knowledge
        graph approaches. Supports both single-cell resolution and
        spot-based spatial transcriptomics platforms. Provides cell
        type deconvolution, ligand-receptor interaction analysis, and
        downstream pathway inference.
URL: https://zaoqu-liu.github.io/SpaTalk/,
        https://github.com/Zaoqu-Liu/SpaTalk
BugReports: https://github.com/Zaoqu-Liu/SpaTalk/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: Seurat (>= 3.0.0), methods, reshape2, Matrix, stringr,
        progress, stats, utils, ggplot2, ggExtra, crayon, ggpubr,
        grDevices, scales, scatterpie, pheatmap, corrplot, circlize,
        ggraph, ggrepel, igraph, foreach, parallel, iterators, readr,
        digest, Rcpp (>= 1.0.0)
LinkingTo: Rcpp, RcppArmadillo
Remotes: linxihui/NNLM
Suggests: rmarkdown, knitr, prettydoc, NNLM, spacexr, SPOTlight,
        deconvSeq, reticulate, anndata, sceasy
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev python3 libx11-dev zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-23 13:41:43 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/SpaTalk
RemoteRef: main
RemoteSha: a89213471656e1d7c846e47ed0ceab8e4348534e
NeedsCompilation: yes
Packaged: 2026-07-03 23:56:52 UTC; root
Author: Zaoqu Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0452-742X>),
  Xin Shao [aut] (ORCID: <https://orcid.org/0000-0002-1928-3878>)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>