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  "Title": "Secreted Signaling Activity Inference",
  "Description": "Inferring secreted protein activities at bulk,\nsingle-cell, and spatial levels. SecAct uses ridge regression\nwith permutation-based significance testing to infer the\nactivity of over 1000 secreted proteins from gene expression\nprofiles.",
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  "Repository": "https://zaoqu-liu.r-universe.dev",
  "Date/Publication": "2026-01-23 14:43:41 UTC",
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    {
      "page": "SecAct.activity.inference",
      "title": "Secreted protein activity inference",
      "topics": [
        "SecAct.activity.inference"
      ]
    },
    {
      "page": "SecAct.activity.inference.scRNAseq",
      "title": "Cell state activity inference from single cell data",
      "topics": [
        "SecAct.activity.inference.scRNAseq"
      ]
    },
    {
      "page": "SecAct.activity.inference.ST",
      "title": "Spot activity inference from spatial data",
      "topics": [
        "SecAct.activity.inference.ST"
      ]
    },
    {
      "page": "SecAct.bar.plot",
      "title": "Draw a bar plot",
      "topics": [
        "SecAct.bar.plot"
      ]
    },
    {
      "page": "SecAct.CCC.circle",
      "title": "Cell-cell communication circle plot",
      "topics": [
        "SecAct.CCC.circle"
      ]
    },
    {
      "page": "SecAct.CCC.dot",
      "title": "Cell-cell communication dot plot",
      "topics": [
        "SecAct.CCC.dot"
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    },
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      "page": "SecAct.CCC.heatmap",
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      "topics": [
        "SecAct.CCC.heatmap"
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      "page": "SecAct.CCC.sankey",
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        "SecAct.CCC.sankey"
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      "page": "SecAct.CCC.scRNAseq",
      "title": "Cell-cell communication from single cell data",
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        "SecAct.CCC.scRNAseq"
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      "page": "SecAct.CCC.scST",
      "title": "Cell-cell communication from spatial data",
      "topics": [
        "SecAct.CCC.scST"
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      "page": "SecAct.check.data",
      "title": "Check SecAct data status",
      "topics": [
        "SecAct.check.data"
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      "page": "SecAct.coxph.regression",
      "title": "Survival regression",
      "topics": [
        "SecAct.coxph.regression"
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      "title": "Download SecAct signature database",
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        "SecAct.download.data"
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      "topics": [
        "SecAct.heatmap.plot"
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      "page": "SecAct.inference.gsl",
      "title": "Secreted protein activity inference",
      "topics": [
        "SecAct.inference.gsl"
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    },
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      "page": "SecAct.inference.r",
      "title": "Secreted protein activity inference",
      "topics": [
        "SecAct.inference.r"
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      "page": "SecAct.lollipop.plot",
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      "topics": [
        "SecAct.signaling.pattern"
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    },
    {
      "page": "SecAct.signaling.pattern.gene",
      "title": "Pattern-associated secreted proteins",
      "topics": [
        "SecAct.signaling.pattern.gene"
      ]
    },
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      "page": "SecAct.signaling.velocity.scST",
      "title": "Secreted protein signaling velocity for single-cell ST",
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        "SecAct.signaling.velocity.scST"
      ]
    },
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      "page": "SecAct.signaling.velocity.spotST",
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      "topics": [
        "SecAct.signaling.velocity.spotST"
      ]
    },
    {
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      ]
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