Package: darwin
Type: Package
Title: Multi-Objective Gene Selection Using Evolutionary Algorithms
Version: 1.0.0
Date: 2026-01-25
Authors@R: c(
    person("Zaoqu", "Liu",
           email = "liuzaoqu@163.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X")))
Author: Zaoqu Liu [aut, cre] (<https://orcid.org/0000-0002-0452-742X>)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>
Description: Automatic gene selection for bulk RNA-seq deconvolution
        using multi-objective optimization. Implements the NSGA-II
        algorithm to simultaneously minimize correlation and maximize
        distance between cell type expression profiles, yielding
        Pareto-optimal gene subsets. Supports Seurat objects (V4 and
        V5), SingleCellExperiment, and standard matrix inputs. Includes
        built-in deconvolution methods and parallel computing support.
License: MIT + file LICENSE
URL: https://zaoqu-liu.github.io/darwin/,
        https://github.com/Zaoqu-Liu/darwin
BugReports: https://github.com/Zaoqu-Liu/darwin/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.0.0)
Imports: Rcpp, R6, Matrix, stats, methods, parallel, future,
        future.apply, ggplot2, scales, cli, rlang, digest
Suggests: Seurat, SeuratObject, SingleCellExperiment,
        SummarizedExperiment, e1071, nnls, testthat (>= 3.0.0), knitr,
        rmarkdown, BiocStyle
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
Config/testthat/edition: 3
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-25 16:43:13 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/darwin
RemoteRef: main
RemoteSha: a6d9027d5903c2e0104fbea2bf141be7cf07fdf9
NeedsCompilation: yes
Packaged: 2026-10-31 09:01:17 UTC; root