Package: fastCNV
Title: Fast CNV Detection for Single-Cell and Spatial Transcriptomics
Version: 2.0.0
Authors@R: 
    c(person("Zaoqu", "Liu", , "liuzaoqu@163.com", role = c("cre", "aut")),
      person("Gadea", "Cabrejas", , "gadea.cabrejas-saiz@u-paris.fr", role = c("aut", "cph")),
      person("Clarice", "Groeneveld", , "clarice.groeneveld@inserm.fr", role = c("aut")))
Description: Fast and accurate detection of Copy Number Variations
        (CNVs) in single-cell RNA sequencing (scRNA-seq) and Spatial
        Transcriptomics (ST) data, including 10X Visium and Visium HD.
        Provides sliding window-based CNV inference, hierarchical
        clustering of CNV profiles, and publication-ready
        visualization. Compatible with Seurat 4.x/5.x.
License: GPL-3
URL: https://zaoqu-liu.github.io/fastCNV/,
        https://github.com/Zaoqu-Liu/fastCNV
BugReports: https://github.com/Zaoqu-Liu/fastCNV/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: ape, biomaRt, circlize, ComplexHeatmap, crayon, dplyr, FNN,
        ggplot2, ggtree, grDevices, graphics, grid, methods, paletteer,
        phangorn, proxy, purrr, scales, Seurat (>= 4.0.0), SeuratObject
        (>= 4.0.0), stats, stringr, utils
LazyData: true
Depends: R (>= 4.1.0)
Suggests: fastCNVdata, knitr, rmarkdown, patchwork, testthat (>=
        3.0.0), tidyr
VignetteBuilder: knitr
NeedsCompilation: no
Maintainer: Zaoqu Liu <liuzaoqu@163.com>
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl python3 zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-23 12:41:17 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/fastCNV
RemoteRef: main
RemoteSha: f61d061cd3388147b5f9397d07d7eabcb68357d1
Packaged: 2026-06-22 10:03:39 UTC; root
Author: Zaoqu Liu [cre, aut],
  Gadea Cabrejas [aut, cph],
  Clarice Groeneveld [aut]