Package: hdWGCNA
Title: High-dimensional Weighted Gene Co-expression Network Analysis
Version: 0.5.00
Authors@R: c(
    person("Zaoqu", "Liu", , "liuzaoqu@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0452-742X")),
    person("Sam", "Morabito", , "smorabit@uci.edu", role = c("ctb"),
           comment = c(ORCID = "0000-0002-7768-4856")),
    person("Zechuan", "Shi", , "zechuas@uci.edu", role = c("ctb"),
          comment = c(ORCID = "0000-0002-2844-5816"))
  )
Description: hdWGCNA is an R package for performing weighted gene
        co-expression network analysis in high dimensional -omics such
        as single-cell RNA-seq or spatial transcriptomics. It provides
        tools for constructing metacells, building co-expression
        networks, computing module eigengenes, and performing various
        downstream analyses including module trait correlation, module
        preservation, and transcription factor network analysis.
License: GPL-3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://zaoqu-liu.github.io/hdWGCNA/,
        https://github.com/Zaoqu-Liu/hdWGCNA
BugReports: https://github.com/Zaoqu-Liu/hdWGCNA/issues
Imports: WGCNA, Seurat (>= 4.0.0), SeuratObject (>= 4.0.0), Matrix,
        harmony (>= 1.0.1), igraph, ggraph, tidygraph, enrichR,
        ggplot2, ggrepel (>= 0.9.0), dplyr, tester, proxy, patchwork,
        magrittr, purrr, uwot, FNN, reshape2, methods, stats, utils,
        data.table, GeneOverlap, GenomicRanges
Suggests: testthat (>= 3.0.0), BiocParallel, xgboost, NetRep,
        SingleCellExperiment, SummarizedExperiment, GenomeInfoDb,
        ensembldb, motifmatchr, monocle3, ggforestplot, ggradar,
        ggrastr, ggseqlogo, corrplot, qgraph, future.apply, Hmisc,
        scales, stringr, tidyr, gtools, devtools
Config/testthat/edition: 3
Depends: R (>= 4.0.0)
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev perl python3 zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-24 06:17:08 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/hdWGCNA
RemoteRef: main
RemoteSha: 5c381c7246d672a0eebddf62619976ffb9f1399e
NeedsCompilation: no
Packaged: 2026-06-23 09:16:29 UTC; root
Author: Zaoqu Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-0452-742X>),
  Sam Morabito [ctb] (ORCID: <https://orcid.org/0000-0002-7768-4856>),
  Zechuan Shi [ctb] (ORCID: <https://orcid.org/0000-0002-2844-5816>)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>