# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "hdWGCNA" in publications use:'
type: software
license: GPL-3.0-only
title: 'hdWGCNA: High-dimensional Weighted Gene Co-expression Network Analysis'
version: 0.5.00
identifiers:
- type: doi
  value: 10.32614/CRAN.package.hdWGCNA
abstract: hdWGCNA is an R package for performing weighted gene co-expression network
  analysis in high dimensional -omics such as single-cell RNA-seq or spatial transcriptomics.
  It provides tools for constructing metacells, building co-expression networks, computing
  module eigengenes, and performing various downstream analyses including module trait
  correlation, module preservation, and transcription factor network analysis.
authors:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0452-742X
preferred-citation:
  type: article
  title: hdWGCNA identifies co-expression networks in high-dimensional transcriptomics
    data.
  authors:
  - family-names: Morabito
    given-names: Samuel
  - family-names: Reese
    given-names: Fairlie
  - family-names: Rahimzadeh
    given-names: Negin
  - family-names: Miyoshi
    given-names: Emily
  - family-names: Swarup
    given-names: Vivek
  journal: Cell Reports Methods
  year: '2023'
  url: https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(23)00127-3
repository: https://zaoqu-liu.r-universe.dev
repository-code: https://github.com/Zaoqu-Liu/hdWGCNA
commit: 5c381c7246d672a0eebddf62619976ffb9f1399e
url: https://zaoqu-liu.github.io/hdWGCNA/
date-released: '2026-01-24'
contact:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0452-742X
references:
- type: article
  title: Relapse to cocaine seeking is regulated by medial habenula NR4A2/NURR1 in
    mice
  authors:
  - family-names: Childs
    given-names: Jessica E.
  - family-names: Morabito
    given-names: Samuel
  - family-names: Das
    given-names: Sudeshna
  - family-names: Santelli
    given-names: Caterina
  - family-names: Pham
    given-names: Victoria
  - family-names: Kusche
    given-names: Kelly
  - family-names: Vera
    given-names: Vanessa Alizo
  - family-names: Reese
    given-names: Fairlie
  - family-names: Campbell
    given-names: Rianne R.
  - family-names: Matheos
    given-names: Dina P.
  - family-names: Swarup
    given-names: Vivek
  - family-names: Wood
    given-names: Marcelo A.
  journal: Cell Reports
  year: '2024'
  url: https://www.sciencedirect.com/science/article/pii/S2211124724002845
- type: article
  title: Single-nucleus chromatin accessibility and transcriptomic characterization
    of Alzheimer's disease
  authors:
  - family-names: Morabito
    given-names: Samuel
  - family-names: Miyoshi
    given-names: Emily
  - family-names: Michael
    given-names: Neethu
  - family-names: Shahin
    given-names: Saba
  - family-names: Martini
    given-names: Alessandra Cadete
  - family-names: Head
    given-names: Elizabeth
  - family-names: Silva
    given-names: Justine
  - family-names: Leavy
    given-names: Kelsey
  - family-names: Perez-Rosendahl
    given-names: Mari
  - family-names: Swarup
    given-names: Vivek
  journal: Nature Genetics
  year: '2021'
  url: https://doi.org/10.1038/s41588-021-00894-z
  doi: 10.1038/s41588-021-00894-z