Package: liana
Type: Package
Title: LIANA: a LIgand-receptor ANalysis frAmework
Version: 0.1.14.9000
Authors@R: c(
    person(
        given = "Zaoqu",
        family = "Liu",
        role = c("cre", "ctb"),
        email = "liuzaoqu@163.com",
        comment = c(ORCID = "0000-0002-0452-742X")
    ),
    person(
        given = "Daniel",
        family = "Dimitrov",
        role = c("aut"),
        email = "daniel.dimitrov@uni-heidelberg.de",
        comment = c(ORCID = "0000-0002-5197-2112")
    ),
    person(
        given = "Charlotte",
        family = "Boys",
        role = c("aut"),
        email = "mm228@stud.uni-heidelberg.de",
        comment = c(ORCID = "0000-0003-3955-5110")
    ),
    person(
        given = "Martin",
        family = "Garrido Rodriguez",
        role = c("aut"),
        email = "martin.garrido@uni-heidelberg.de",
        comment = c(ORCID = "0000-0003-4125-5643")
    ),
    person(
        given = "Denes",
        family = "Turei",
        role = c("aut"),
        email = "turei.denes@gmail.com",
        comment = c(ORCID = "0000-0002-7249-9379")
    ),
    person(
        given = "James",
        family = "Nagai",
        role = c("aut"),
        email = "jshinitinaga@ukaachen.de",
        comment = c(ORCID = "0000-0002-7655-7206")
    ))
Description: LIANA provides a number of methods and resources for
        ligand-receptor interaction inference from scRNA-seq data. This
        version is specifically designed for Seurat v4 and SeuratObject
        v4 compatibility. It includes improved Python environment
        handling and better integration with existing workflows.
License: GPL-3 + file LICENSE
URL: https://zaoqu-liu.github.io/liana/,
        https://github.com/Zaoqu-Liu/liana
BugReports: https://github.com/Zaoqu-Liu/liana/issues
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R(>= 4.0)
Imports: utils, reticulate, stringr, magrittr, purrr, tidyr, tibble,
        dplyr, readr, rlang, OmnipathR, SingleCellExperiment, scran,
        scater, scuttle, SeuratObject (>= 4.0.0), tidyselect, ggplot2,
        ComplexHeatmap, RColorBrewer, methods
Suggests: CellChat, knitr, BiocStyle, rmarkdown, markdown, testthat (>=
        3.0.0), sessioninfo, Seurat (>= 4.0.0), entropy, circlize,
        furrr (>= 0.2.0), future, tidyverse, devtools, decoupleR,
        broom, igraph, patchwork, basilisk, basilisk.utils
biocViews: scater, scran, SingleCellExperiment, ComplexHeatmap
Remotes: sqjin/CellChat, saezlab/OmnipathR, saezlab/decoupleR,
        Zaoqu-Liu/Connectome
RoxygenNote: 7.3.3
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl python3 libx11-dev
        zlib1g-dev
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-25 04:59:47 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/liana
RemoteRef: main
RemoteSha: a14953e154850f6fcf1a73a35a39050724090314
NeedsCompilation: no
Packaged: 2026-07-13 05:16:19 UTC; root
Author: Zaoqu Liu [cre, ctb] (ORCID: <https://orcid.org/0000-0002-0452-742X>),
  Daniel Dimitrov [aut] (ORCID: <https://orcid.org/0000-0002-5197-2112>),
  Charlotte Boys [aut] (ORCID: <https://orcid.org/0000-0003-3955-5110>),
  Martin Garrido Rodriguez [aut] (ORCID:
    <https://orcid.org/0000-0003-4125-5643>),
  Denes Turei [aut] (ORCID: <https://orcid.org/0000-0002-7249-9379>),
  James Nagai [aut] (ORCID: <https://orcid.org/0000-0002-7655-7206>)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>