# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "multinichenetr" in publications use:'
type: software
license: GPL-3.0-only
title: 'multinichenetr: MultiNicheNet: a flexible framework for differential cell-cell
  communication analysis from multi-sample multi-condition single-cell transcriptomics
  data'
version: 2.1.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.multinichenetr
abstract: This package allows you the investigate differences in intercellular communication
  between multiple conditions of interest. It is a flexible framework that enables
  multi-criteria prioritization of cell-cell communication patterns from scRNAseq
  datasets with complex experimental designs. These datasets can contain multiple
  samples (e.g. patients) over different groups of interest (e.g. disease subtypes).
  With MultiNicheNet, you can now better analyze the differences in cell-cell signaling
  between the different groups of interest.
authors:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0452-742X
preferred-citation:
  type: generic
  title: 'MultiNicheNet: a flexible framework for differential cell-cell communication
    analysis from multi-sample multi-condition single-cell transcriptomics data'
  authors:
  - family-names: Robin
    given-names: Browaeys
  year: '2023'
  url: https://www.biorxiv.org/content/10.1101/2023.06.13.544751v1
repository: https://zaoqu-liu.r-universe.dev
repository-code: https://github.com/Zaoqu-Liu/multinichenetr
commit: 8f0a5748b8cd2eafbb1ce1dcbf988e4659847f1b
url: https://zaoqu-liu.github.io/multinichenetr/
date-released: '2026-01-25'
contact:
- family-names: Liu
  given-names: Zaoqu
  email: liuzaoqu@163.com
  orcid: https://orcid.org/0000-0002-0452-742X