Changes in version 0.99.1                        

Bug Fixes and Improvements

  - Added createScMetaLinkFromSCE() function for SingleCellExperiment
    support
  - Cleaned repository structure for Bioconductor submission
  - Reduced package size by optimizing vignettes

                       Changes in version 0.99.0                        

New Features

  - Initial Bioconductor submission
  - createScMetaLink() - Create scMetaLink object from expression data
  - createScMetaLinkFromSeurat() - Create from Seurat object
  - createScMetaLinkFromSCE() - Create from SingleCellExperiment
  - createScMetaLinkFromSpatial() - Create from spatial transcriptomics
    data
  - inferProduction() - Infer metabolite production potential
  - inferSensing() - Infer metabolite sensing capability
  - computeCommunication() - Compute cell-cell communication scores
  - computeSpatialCommunication() - Spatial communication analysis
  - filterSignificantInteractions() - Filter by statistical significance
  - aggregateByPathway() - Pathway-level aggregation

Lactate Signaling Module

  - inferLactateSignaling() - Specialized lactate communication analysis
  - checkLactateGenes() - Check lactate-related gene availability
  - getLactateGenes() - Get curated lactate gene sets

Visualization

  - plotCommunicationHeatmap() - Communication heatmap
  - plotCommunicationCircle() - Chord diagram
  - plotCommunicationNetwork() - Network visualization
  - plotMetaboliteFlow() - Metabolite flow diagram
  - plotSpatialCellTypes() - Spatial cell type distribution
  - plotSpatialFeature() - Spatial feature maps
  - plotSpatialCommunicationNetwork() - Spatial network overlay