Package: scVeloR
Type: Package
Title: RNA Velocity Analysis in R
Version: 0.1.0
Authors@R: c(
    person("Zaoqu", "Liu", 
           email = "liuzaoqu@163.com", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-1234-5678")),
    person("scVelo Team", 
           role = "ctb",
           comment = "Original Python implementation")
    )
Description: A comprehensive R implementation of RNA velocity analysis
        based on the scvelo Python package. This package enables
        estimation of RNA velocities for single-cell RNA-seq data,
        supporting deterministic (steady-state), stochastic, and
        dynamical models. The dynamical model uses an
        Expectation-Maximization algorithm to infer full
        transcriptional kinetics including transcription, splicing, and
        degradation rates. The package integrates seamlessly with
        Seurat objects and provides visualization functions for
        velocity embedding, stream plots, and phase portraits.
License: MIT + file LICENSE
URL: https://github.com/Zaoqu-Liu/scVeloR,
        https://zaoqu-liu.github.io/scVeloR/
BugReports: https://github.com/Zaoqu-Liu/scVeloR/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.0
Depends: R (>= 4.0.0)
Imports: Matrix, Rcpp (>= 1.0.0), RcppArmadillo, R6, methods, stats,
        utils, grDevices
Suggests: Seurat (>= 4.0.0), SeuratObject, ggplot2 (>= 3.0.0), viridis,
        RSpectra, testthat (>= 3.0.0), knitr, rmarkdown, RcppAnnoy,
        RcppHNSW, parallel
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
Config/testthat/edition: 3
Repository: https://zaoqu-liu.r-universe.dev
Date/Publication: 2026-01-25 18:34:03 UTC
RemoteUrl: https://github.com/Zaoqu-Liu/scVeloR
RemoteRef: main
RemoteSha: 319e312f725218eac3c5bfcc9303c453df6add2c
NeedsCompilation: yes
Packaged: 2026-10-12 07:47:17 UTC; root
Author: Zaoqu Liu [aut, cre] (ORCID: <https://orcid.org/0000-0002-1234-5678>),
  scVelo Team [ctb] (Original Python implementation)
Maintainer: Zaoqu Liu <liuzaoqu@163.com>