Package: SCORPION 1.2.2

SCORPION: Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks

Constructs gene regulatory networks from single-cell gene expression data using the PANDA (Passing Attributes between Networks for Data Assimilation) algorithm.

Authors:Zaoqu Liu [aut, cre], Daniel Osorio [aut], Marieke L. Kuijjer [aut]

SCORPION_1.2.2.tar.gz
SCORPION_1.2.2.zip(r-4.7)SCORPION_1.2.2.zip(r-4.6)SCORPION_1.2.2.zip(r-4.5)
SCORPION_1.2.2.tgz(r-4.6-x86_64)SCORPION_1.2.2.tgz(r-4.6-arm64)SCORPION_1.2.2.tgz(r-4.5-x86_64)SCORPION_1.2.2.tgz(r-4.5-arm64)
SCORPION_1.2.2.tar.gz(r-4.7-arm64)SCORPION_1.2.2.tar.gz(r-4.7-x86_64)SCORPION_1.2.2.tar.gz(r-4.6-arm64)SCORPION_1.2.2.tar.gz(r-4.6-x86_64)
SCORPION_1.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SCORPION/json (API)

# Install 'SCORPION' in R:
install.packages('SCORPION', repos = c('https://zaoqu-liu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zaoqu-liu/scorpion/issues

Pkgdown/docs site:https://zaoqu-liu.github.io

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • scorpionTest - Example single-cell gene expression, motif, and ppi data

On CRAN:

Conda:

openblascppopenmp

3.62 score 21 scripts 557 downloads 1 exports 16 dependencies

Last updated from:c01e59eb2e (on main). Checks:13 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK187
linux-devel-x86_64OK198
source / vignettesOK333
linux-release-arm64OK183
linux-release-x86_64OK205
macos-release-arm64OK203
macos-release-x86_64OK299
macos-oldrel-arm64OK224
macos-oldrel-x86_64OK506
windows-develOK542
windows-releaseOK521
windows-oldrelOK540
wasm-releaseOK177

Exports:scorpion

Dependencies:clicpp11glueigraphirlbalatticelifecyclemagrittrMatrixpbapplypkgconfigRANNRcppRcppArmadillorlangvctrs

Advanced Usage and Best Practices

Zaoqu Liu

Rendered fromadvanced-usage.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-29
Started: 2026-01-29

Algorithm and Mathematical Framework

Zaoqu Liu

Rendered fromalgorithm.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-29
Started: 2026-01-29

Network Visualization

Zaoqu Liu

Rendered fromnetwork-visualization.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-29
Started: 2026-01-29

Quick Start Guide

Zaoqu Liu

Rendered fromquick-start.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2026-01-29
Started: 2026-01-29