Package: recall 0.1.0
recall: Calibrated Clustering with Artificial Variables to Avoid Over-Clustering in Single-Cell RNA-Sequencing
recall (Calibrated Clustering with Artificial Variables) is a method for protecting against over-clustering by controlling for the impact of double-dipping. The approach can be applied to any clustering algorithm (implemented are the Louvain and Leiden algorithms with plans for K-means, and hierarchical clustering algorithms). The method provides state-of-the-art clustering performance and can rapidly analyze large-scale scRNA-seq studies and is compatible with the Seurat library (V4 and V5).
Authors:
recall_0.1.0.tar.gz
recall_0.1.0.zip(r-4.7-any)recall_0.1.0.zip(r-4.6-any)recall_0.1.0.zip(r-4.5-any)
recall_0.1.0.tgz(r-4.6-any)recall_0.1.0.tgz(r-4.5-any)
recall_0.1.0.tar.gz(r-4.7-any)recall_0.1.0.tar.gz(r-4.6-any)
recall_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
recall/json (API)
| # Install 'recall' in R: |
| install.packages('recall', repos = c('https://zaoqu-liu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zaoqu-liu/recall/issues
Pkgdown/docs site:https://zaoqu-liu.github.io
Last updated from:ebad0cdf97 (on main). Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | ERROR | 214 | ||
| source / vignettes | OK | 249 | ||
| linux-release | ERROR | 189 | ||
| macos-release | ERROR | 116 | ||
| macos-oldrel | ERROR | 80 | ||
| windows-devel | ERROR | 89 | ||
| windows-release | ERROR | 103 | ||
| windows-oldrel | ERROR | 125 | ||
| wasm-release | OK | 169 |
Exports:FindClustersCountsplitFindClustersRecallseurat_workflow
Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocParallelbitopsbslibcachemcaToolscliclustercodetoolscommonmarkcoopcorpcorcountsplitcowplotcpp11crosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomeforeachformatRfsfutile.loggerfutile.optionsfuturefuture.applygamlssgamlss.datagamlss.distgenericsGenomicRangesggplot2ggrepelggridgesglmnetglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobanditeratorsjquerylibjsonliteKernSmoothknitrknockofflabelinglambda.rlamWlaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimeminiUImvtnormnlmeopensslotelparallellypatchworkpbapplypbmcapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppParallelRcppProgressRcppThreadRcppTOMLRdsdpreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS4ArraysS4VectorsS7sassscalesscattermorescDesign3sctransformSeqinfoSeuratSeuratObjectshapeshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArraysparseMVNspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidyrtidyselecttinytexumaputf8uwotvctrsviridisviridisLitewithrxfunxtableXVectoryamlzoo
Last update: 2026-01-23
Started: 2026-01-23
Last update: 2026-01-23
Started: 2026-01-23
Last update: 2026-01-23
Started: 2026-01-23
Last update: 2026-01-23
Started: 2026-01-23
