miccec. To fix this you can add URL: https://zaoqu-liu.r-universe.dev/yaGST to the package DESCRIPTION file. See also theR-universe documentation.Package: yaGST 2017.08.25
yaGST: Competitive gene set and regulon tests.
This is a collection of wrappers to the Wilcoxon test to run competitive gene set and regulon tests.
Authors:
yaGST_2017.08.25.tar.gz
yaGST_2017.08.25.zip(r-4.7)yaGST_2017.08.25.zip(r-4.6)yaGST_2017.08.25.zip(r-4.5)
yaGST_2017.08.25.tgz(r-4.6-any)yaGST_2017.08.25.tgz(r-4.5-any)
yaGST_2017.08.25.tar.gz(r-4.7-any)yaGST_2017.08.25.tar.gz(r-4.6-any)
yaGST_2017.08.25.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
yaGST/json (API)
| # Install 'yaGST' in R: |
| install.packages('yaGST', repos = c('https://zaoqu-liu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/miccec/yagst/issues
- rankedList - An example of pre-ranked list.
Last updated from:56227df3ae (on master). Checks:7 ERROR, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 238 | ||
| source / vignettes | OK | 140 | ||
| linux-release-x86_64 | ERROR | 244 | ||
| macos-release-arm64 | ERROR | 122 | ||
| macos-oldrel-arm64 | ERROR | 102 | ||
| windows-devel | ERROR | 177 | ||
| windows-release | ERROR | 171 | ||
| windows-oldrel | ERROR | 258 | ||
| wasm-release | OK | 101 |
Exports:eeMWWgmt2GOGO2gmtmwwExtGSTmwwGSTplot.mwwExtGSTplot.mwwGSTprint.mwwExtGSTprint.mwwGST
Dependencies:clicodetoolscpp11doParallelfarverforeachggplot2gluegtableisobanditeratorslabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Competitive gene set and regulon tests. | yaGST-package |
| eeMWW | eeMWW |
| Read a .gmt file and generate a list of gene set sequences. | gmt2GO |
| Generate a .gmt file from a list of gene set sequences. | GO2gmt |
| Competitive Regulon Test | mwwExtGST |
| Competitive Gene Set Test | mwwGST |
| An example of pre-ranked list. | rankedList |
